Research Publications

Social status alters chromatin accessibility and the gene regulatory response to glucocorticoid stimulation in rhesus macaques.

Snyder-Mackler, N; Sanz, J; Kohn, JN; Voyles, T; Pique-Regi, R; Wilson, ME; Barreiro, LB; Tung, J. January 1, 2019

Social affiliation predicts mitochondrial DNA copy number in female rhesus macaques.

Debray, R; Snyder-Mackler, N; Kohn, JN; Wilson, ME; Barreiro, LB; Tung, J. January 1, 2019

Generating RNA Baits for Capture-Based Enrichment.

Snyder-Mackler, N; Voyles, T; Tung, J. January 1, 2019

Sensing Mitochondrial Acetyl-CoA to Tune Respiration.

Mills, CA; Trub, AG; Hirschey, MD. January 1, 2019

Genome-wide quantification of the effects of DNA methylation on human gene regulation.

Lea, AJ; Vockley, CM; Johnston, RA; Del Carpio, CA; Barreiro, LB; Reddy, TE; Tung, J. December 21, 2018

Human genome-wide measurement of drug-responsive regulatory activity.

Johnson, GD; Barrera, A; McDowell, IC; D'Ippolito, AM; Majoros, WH; Vockley, CM; Wang, X; Allen, AS; Reddy, TE. December 21, 2018

Human genome-wide measurement of drug-responsive regulatory activity.

Johnson, GD; Barrera, A; McDowell, IC; D'Ippolito, AM; Majoros, WH; Vockley, CM; Wang, X; Allen, AS; Reddy, TE. December 21, 2018

Genome-wide quantification of the effects of DNA methylation on human gene regulation.

Lea, AJ; Vockley, CM; Johnston, RA; Del Carpio, CA; Barreiro, LB; Reddy, TE; Tung, J. December 21, 2018

Comprehensive functional genomic resource and integrative model for the human brain.

Wang, D; Liu, S; Warrell, J; Won, H; Shi, X; Navarro, FCP; Clarke, D; Gu, M; Emani, P; Yang, YT; Xu, M; Gandal, MJ; Lou, S; Zhang, J; Park, JJ; Yan, C; Rhie, SK; Manakongtreecheep, K; Zhou, H; Nathan, A; Peters, M; Mattei, E; Fitzgerald, D; Brunetti, T; Moore, J; Jiang, Y; Girdhar, K; Hoffman, GE; Kalayci, S; Gümüş, ZH; Crawford, GE; PsychENCODE Consortium, ; Roussos, P; Akbarian, S; Jaffe, AE; White, KP; Weng, Z; Sestan, N; Geschwind, DH; Knowles, JA; Gerstein, MB. December 14, 2018

Transcriptome and epigenome landscape of human cortical development modeled in organoids.

Amiri, A; Coppola, G; Scuderi, S; Wu, F; Roychowdhury, T; Liu, F; Pochareddy, S; Shin, Y; Safi, A; Song, L; Zhu, Y; Sousa, AMM; PsychENCODE Consortium, ; Gerstein, M; Crawford, GE; Sestan, N; Abyzov, A; Vaccarino, FM. December 14, 2018

miR-34a is a microRNA safeguard for Citrobacter-induced inflammatory colon oncogenesis.

Wang, L; Wang, E; Wang, Y; Mines, R; Xiang, K; Sun, Z; Zhou, G; Chen, K-Y; Rakhilin, N; Chao, S; Ye, G; Wu, Z; Yan, H; Shen, H; Everitt, J; Bu, P; Shen, X. December 13, 2018

Ecological differentiation facilitates fine-scale coexistence of sexual and asexual Boechera.

Rushworth, CA; Windham, MD; Keith, RA; Mitchell-Olds, T. December 13, 2018

Dominance rank-associated gene expression is widespread, sex-specific, and a precursor to high social status in wild male baboons.

Lea, AJ; Akinyi, MY; Nyakundi, R; Mareri, P; Nyundo, F; Kariuki, T; Alberts, SC; Archie, EA; Tung, J. December 11, 2018

AAV CRISPR editing rescues cardiac and muscle function for 18 months in dystrophic mice.

Hakim, CH; Wasala, NB; Nelson, CE; Wasala, LP; Yue, Y; Louderman, JA; Lessa, TB; Dai, A; Zhang, K; Jenkins, GJ; Nance, ME; Pan, X; Kodippili, K; Yang, NN; Chen, S-J; Gersbach, CA; Duan, D. December 6, 2018

Neurohormonal signaling via a sulfotransferase antagonizes insulin-like signaling to regulate a Caenorhabditis elegans stress response.

Burton, NO; Dwivedi, VK; Burkhart, KB; Kaplan, REW; Baugh, LR; Horvitz, HR. December 4, 2018

Loss of tubulin deglutamylase CCP1 causes infantile-onset neurodegeneration.

Shashi, V; Magiera, MM; Klein, D; Zaki, M; Schoch, K; Rudnik-Schöneborn, S; Norman, A; Lopes Abath Neto, O; Dusl, M; Yuan, X; Bartesaghi, L; De Marco, P; Alfares, AA; Marom, R; Arold, ST; Guzmán-Vega, FJ; Pena, LD; Smith, EC; Steinlin, M; Babiker, MO; Mohassel, P; Foley, AR; Donkervoort, S; Kaur, R; Ghosh, PS; Stanley, V; Musaev, D; Nava, C; Mignot, C; Keren, B; Scala, M; Tassano, E; Picco, P; Doneda, P; Fiorillo, C; Issa, MY; Alassiri, A; Alahmad, A; Gerard, A; Liu, P; Yang, Y; Ertl-Wagner, B; Kranz, PG; Wentzensen, IM; Stucka, R; Stong, N; Allen, AS; Goldstein, DB; Undiagnosed Diseases Network, ; Schoser, B; Rösler, KM; Alfadhel, M; Capra, V; Chrast, R; Strom, TM; Kamsteeg, E-J; Bönnemann, CG; Gleeson, JG; Martini, R; Janke, C; Senderek, J. December 3, 2018

Applying ecological resistance and resilience to dissect bacterial antibiotic responses.

Meredith, HR; Andreani, V; Ma, HR; Lopatkin, AJ; Lee, AJ; Anderson, DJ; Batt, G; You, L. December 1, 2018

TET2 Deficiency Sets the Stage for B-cell Lymphoma.

Shingleton, JR; Dave, SS. December 1, 2018

Microbial nitrogen limitation in the mammalian large intestine.

Reese, AT; Pereira, FC; Schintlmeister, A; Berry, D; Wagner, M; Hale, LP; Wu, A; Jiang, S; Durand, HK; Zhou, X; Premont, RT; Diehl, AM; O'Connell, TM; Alberts, SC; Kartzinel, TR; Pringle, RM; Dunn, RR; Wright, JP; David, LA. December 1, 2018

Nonselective autophagy reduces mitochondrial content during starvation in Caenorhabditis elegans.

Hibshman, JD; Leuthner, TC; Shoben, C; Mello, DF; Sherwood, DR; Meyer, JN; Baugh, LR. December 1, 2018