2007 Publications

2007 Publications

Trophinin is a potent prognostic marker of ovarian cancer involved in platinum sensitivity.
Baba T, Mori S, Matsumura N, Kariya M, Murphy SK, Kondoh E, Kusakari T, Kuroda H, Mandai M, Higuchi T, Takakura K, Fukuda MN, Fujii S.
Biochem Biophys Res Commun..360(2):363-9

Global functional analysis of nucleophosmin in Taxol response, cancer, chromatin regulation, and ribosomal DNA transcription
Bergstralh DT, Conti BJ, Moore CB, Brickey WJ, Taxman DJ, Ting JP
Experimental Cell Research.313:65-76

A high-resolution root spatiotemporal map reveals dominant expression patterns
Brady SM, Orlando DA, Lee JY, Wang JY, Koch J, Dinneny JR, Mace D, Ohler U, Benfey PN

Variation in Xi chromatin organization and correlation of the H3K27me3 chromatin territories to transcribed sequences by microarray analysis
Chadwick BP

A microarray analysis of the XX Wnt4 mutant gonad targeted at the identification of genes involved in testis vascular differentiation.
Coveney D, Ross AJ, Slone JD, Capel B
Gene Expr Patterns .7:82-92

Integrated proteomic and transcriptomic profiling of mouse lung development and Nmyc target genes
Cox B, Kislinger T, Wigle DA, Kannan A, Brown K, Okubo T, Hogan B, Jurisica I, Frey B, Rossant J, Emili A
Mol Syst Biol.v3:109

An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants
Cui H, Levesque MP, Vernoux T, Jung JW, Paquette AJ, Gallagher KL, Wang JY, Blilou I, Scheres B, Benfey PN

Gene expression signatures that predict radiation exposure in mice and humans.
Dressman H, Muramoto GG, Chao NJ, Meadows S, Marshall D, Ginsburg GS, Nevins JR, and Chute J
PLoS Medicine .4:690-701

Genome-wide network analysis reveals the global properties of IFN-beta immediate transcriptional effects in humans
Fernald GH, Knott S, Pachner A, Caillier SJ, Narayan K, Oksenberg JR, Mousavi P, and Baranzini SE
Journal of Immunology.:5076-5085

Innate immunity and transcription of MGAT-III and Toll-like receptors in Alzheimer's disease patients are improved by bisdemethoxycurcumin
Fiala M, Liu PT, Espinosa-Jeffrey A, Rosenthal MJ, Bernard G, Ringman JM, Sayre J, Zhang L, Zaghi J, Dejbakhsh S, Chiang B, Hui J, Mahanian M, Gabhaee A, Hong P, Cashman J.

Genomic strategies for personalized cancer therapy.
Garman KS, Nevins JR, Potti A
Hum Mol Genet.2:R226-32

Decitabine up-regulates S100A2 expression and synergizes with IFN-gamma to kill uveal melanoma cells.
Gollob JA, Sciambi CJ.
Clin Cancer Res..13(17):5219-25

A viral microRNA functions as an orthologue of cellular miR-155.
Gottwein E, Mukherjee N, Sachse C, Frenzel C, Majoros WH, Chi JT, Braich R, Manoharan M, Soutschek J, Ohler U, Cullen BR

Adenoviral infection induces a multi-faceted innate cellular immune response that is mediated by the toll-like receptor pathway in A549 cells.
Hartman ZC, Black EP, Amalfitano A

Adenovirus infection triggers a rapid, MyD88-Regulated transcriptome response critical to acute-phase and adaptive immune responses in vivo.
Hartman ZC, Kiang A, Everett RS, Derra D, Yang XY, Clay TM, and Amalfitano A
Journal of Virology .81:1796-1812

The frequency dependent response of the vascular endothelium to pulsatile shear stress
Himburg HA, Dowd SE, Friedman MH
Am J Physiol Heart Circ Physiol.293(1):H645-53

Mesenchymal stem cells use integrin beta1 not CXC chemokine receptor 4 for myocardial migration and engraftment.
Ip JE, Wu Y, Huang J, Zhang L, Pratt RE, Dzau VJ.
Mol Biol Cell.18(8):2873-82.

Compensation and specificity of function within the E2F family
Kong, L.-J., Chang, J., and Nevins, J. R

Genetic Analysis of Intracranial Tumors in a Murine Model of Glioma Demonstrate a Shift in Gene Expression in Response to Host Immunity.
Learn CA, Grossi PM, Schmittling RJ, Xie W, Mitchell DA, Karikari I, Wei Z, Dressman H, Sampson JH.
Journal of Neuroimmunology .182:63-72

NPAS1 regulates branching morphogenesis in embryonic lung
Levesque BM, Zhou S, Shan L, Johnston P, Kong Y, Degan S, Sunday ME
Am J Respir Cell Mol Biol .36:427-34

Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome.
Xi, H, Shulha, HP, Lin, JM, Vales TR, Fu Y, Bodine DM, McKay RDG, Chenoweth JG, Tesar PJ, Furey TS, Weng Z, Crawford GE
PLoS Genet.3(8):e136

Global analysis of della direct targets in early gibberellin signaling in Arabidopsis
Zentella R, Zhang ZL, Park M, Thomas SG, Endo A, Murase K, Fleet CM, Jikumaru Y, Nambara E, Kamiya Y, Sun TP
Plant Cell.19(10):3037-57