Research Publications

The Pediatric Obesity Microbiome and Metabolism Study (POMMS): Methods, Baseline Data, and Early Insights.

McCann, JR; Bihlmeyer, NA; Roche, K; Catherine, C; Jawahar, J; Kwee, LC; Younge, NE; Silverman, J; Ilkayeva, O; Sarria, C; Zizzi, A; Wootton, J; Poppe, L; Anderson, P; Arlotto, M; Wei, Z; Granek, JA; Valdivia, RH; David, LA; Dressman, HK; Newgard, CB; Shah, SH; Seed, PC; Rawls, JF; Armstrong, SC. March 1, 2021

Integrated chromatin and transcriptomic profiling of patient-derived colon cancer organoids identifies personalized drug targets to overcome oxaliplatin resistance

Tung, KL; Chen, KY; Negrete, M; Chen, T; Safi, A; Aljamal, AA; Song, L; Crawford, GE; Ding, S; Hsu, DS; Shen, X. March 1, 2021

The Pediatric Obesity Microbiome and Metabolism Study (POMMS): Methods, Baseline Data, and Early Insights.

McCann, JR; Bihlmeyer, NA; Roche, K; Catherine, C; Jawahar, J; Kwee, LC; Younge, NE; Silverman, J; Ilkayeva, O; Sarria, C; Zizzi, A; Wootton, J; Poppe, L; Anderson, P; Arlotto, M; Wei, Z; Granek, JA; Valdivia, RH; David, LA; Dressman, HK; Newgard, CB; Shah, SH; Seed, PC; Rawls, JF; Armstrong, SC. March 1, 2021

An Epigenetic Pathway in Rice Connects Genetic Variation to Anaerobic Germination and Seedling Establishment.

Castano-Duque, L; Ghosal, S; Quilloy, FA; Mitchell-Olds, T; Dixit, S. February 26, 2021

A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2.

Delorey, TM; Ziegler, CGK; Heimberg, G; Normand, R; Yang, Y; Segerstolpe, A; Abbondanza, D; Fleming, SJ; Subramanian, A; Montoro, DT; Jagadeesh, KA; Dey, KK; Sen, P; Slyper, M; Pita-Juárez, YH; Phillips, D; Bloom-Ackerman, Z; Barkas, N; Ganna, A; Gomez, J; Normandin, E; Naderi, P; Popov, YV; Raju, SS; Niezen, S; Tsai, LT-Y; Siddle, KJ; Sud, M; Tran, VM; Vellarikkal, SK; Amir-Zilberstein, L; Atri, DS; Beechem, J; Brook, OR; Chen, J; Divakar, P; Dorceus, P; Engreitz, JM; Essene, A; Fitzgerald, DM; Fropf, R; Gazal, S; Gould, J; Grzyb, J; Harvey, T; Hecht, J; Hether, T; Jane-Valbuena, J; Leney-Greene, M; Ma, H; McCabe, C; McLoughlin, DE; Miller, EM; Muus, C; Niemi, M; Padera, R; Pan, L; Pant, D; Pe'er, C; Pfiffner-Borges, J; Pinto, CJ; Plaisted, J; Reeves, J; Ross, M; Rudy, M; Rueckert, EH; Siciliano, M; Sturm, A; Todres, E; Waghray, A; Warren, S; Zhang, S; Zollinger, DR; Cosimi, L; Gupta, RM; Hacohen, N; Hide, W; Price, AL; Rajagopal, J; Tata, PR; Riedel, S; Szabo, G; Tickle, TL; Hung, D; Sabeti, PC; Novak, R; Rogers, R; Ingber, DE; Gordon Jiang, Z; Juric, D; Babadi, M; Farhi, SL; Stone, JR; Vlachos, IS; Solomon, IH; Ashenberg, O; Porter, CBM; Li, B; Shalek, AK; Villani, A-C; Rozenblatt-Rosen, O; Regev, A. February 25, 2021

Zinc transporter ZIP7 is a novel determinant of ferroptosis.

Chen, P-H; Wu, J; Xu, Y; Ding, C-KC; Mestre, AA; Lin, C-C; Yang, W-H; Chi, J-T. February 19, 2021

Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae.

Chen, C; Gu, Y; Philippe, J; Zhang, P; Bachman, H; Zhang, J; Mai, J; Rufo, J; Rawls, JF; Davis, EE; Katsanis, N; Huang, TJ. February 18, 2021

Association of History of Psychopathology With Accelerated Aging at Midlife.

Wertz, J; Caspi, A; Ambler, A; Broadbent, J; Hancox, RJ; Harrington, H; Hogan, S; Houts, RM; Leung, JH; Poulton, R; Purdy, SC; Ramrakha, S; Rasmussen, LJH; Richmond-Rakerd, LS; Thorne, PR; Wilson, GA; Moffitt, TE. February 17, 2021

Association of History of Psychopathology With Accelerated Aging at Midlife.

Wertz, J; Caspi, A; Ambler, A; Broadbent, J; Hancox, RJ; Harrington, H; Hogan, S; Houts, RM; Leung, JH; Poulton, R; Purdy, SC; Ramrakha, S; Rasmussen, LJH; Richmond-Rakerd, LS; Thorne, PR; Wilson, GA; Moffitt, TE. February 17, 2021

Dysregulated transcriptional responses to SARS-CoV-2 in the periphery.

McClain, MT; Constantine, FJ; Henao, R; Liu, Y; Tsalik, EL; Burke, TW; Steinbrink, JM; Petzold, E; Nicholson, BP; Rolfe, R; Kraft, BD; Kelly, MS; Saban, DR; Yu, C; Shen, X; Ko, EM; Sempowski, GD; Denny, TN; Ginsburg, GS; Woods, CW. February 17, 2021

Versatile, High-Resolution, and Large Field-of-View Single-Molecule Imaging by Oblique Plane Microscopy

Brown, P; Kruithoff, R; Zhou, L; Kobayashi, Y; Tata, PR; Millet-Sikking, A; York, AG; Dean, KM; Fiolka, RP; Shepherd, DP. February 12, 2021

The cancer microbiome atlas: a pan-cancer comparative analysis to distinguish tissue-resident microbiota from contaminants.

Dohlman, AB; Arguijo Mendoza, D; Ding, S; Gao, M; Dressman, H; Iliev, ID; Lipkin, SM; Shen, X. February 10, 2021

Enteroendocrine cells sense bacterial tryptophan catabolites to activate enteric and vagal neuronal pathways.

Ye, L; Bae, M; Cassilly, CD; Jabba, SV; Thorpe, DW; Martin, AM; Lu, H-Y; Wang, J; Thompson, JD; Lickwar, CR; Poss, KD; Keating, DJ; Jordt, S-E; Clardy, J; Liddle, RA; Rawls, JF. February 10, 2021

A method to culture human alveolar rhabdomyosarcoma cell lines as rhabdospheres demonstrates an enrichment in stemness and Notch signaling.

Slemmons, KK; Deel, MD; Lin, Y-T; Oristian, KM; Kuprasertkul, N; Genadry, KC; Chen, P-H; Chi, J-TA; Linardic, CM. February 9, 2021

Mutational processes in cancer preferentially affect binding of particular transcription factors.

Liu, M; Boot, A; Ng, AWT; Gordân, R; Rozen, SG. February 8, 2021

Predicting Vibrio cholerae Infection and Disease Severity Using Metagenomics in a Prospective Cohort Study.

Levade, I; Saber, MM; Midani, FS; Chowdhury, F; Khan, AI; Begum, YA; Ryan, ET; David, LA; Calderwood, SB; Harris, JB; LaRocque, RC; Qadri, F; Shapiro, BJ; Weil, AA. February 3, 2021

Pervasively Thinner Neocortex as a Transdiagnostic Feature of General Psychopathology.

Romer, AL; Elliott, ML; Knodt, AR; Sison, ML; Ireland, D; Houts, R; Ramrakha, S; Poulton, R; Keenan, R; Melzer, TR; Moffitt, TE; Caspi, A; Hariri, AR. February 1, 2021

Identifying Adolescents at Risk for Depression: A Prediction Score Performance in Cohorts Based in 3 Different Continents.

Rocha, TB-M; Fisher, HL; Caye, A; Anselmi, L; Arseneault, L; Barros, FC; Caspi, A; Danese, A; Gonçalves, H; Harrington, HL; Houts, R; Menezes, AMB; Moffitt, TE; Mondelli, V; Poulton, R; Rohde, LA; Wehrmeister, F; Kieling, C. February 1, 2021