Research Publications

Social status alters chromatin accessibility and the gene regulatory response to glucocorticoid stimulation in rhesus macaques.

Snyder-Mackler, N; Sanz, J; Kohn, JN; Voyles, T; Pique-Regi, R; Wilson, ME; Barreiro, LB; Tung, J. January 1, 2019

Sensing Mitochondrial Acetyl-CoA to Tune Respiration.

Mills, CA; Trub, AG; Hirschey, MD. January 1, 2019

Genome-wide quantification of the effects of DNA methylation on human gene regulation.

Lea, AJ; Vockley, CM; Johnston, RA; Del Carpio, CA; Barreiro, LB; Reddy, TE; Tung, J. December 21, 2018

Human genome-wide measurement of drug-responsive regulatory activity.

Johnson, GD; Barrera, A; McDowell, IC; D'Ippolito, AM; Majoros, WH; Vockley, CM; Wang, X; Allen, AS; Reddy, TE. December 21, 2018

Human genome-wide measurement of drug-responsive regulatory activity.

Johnson, GD; Barrera, A; McDowell, IC; D'Ippolito, AM; Majoros, WH; Vockley, CM; Wang, X; Allen, AS; Reddy, TE. December 21, 2018

Genome-wide quantification of the effects of DNA methylation on human gene regulation.

Lea, AJ; Vockley, CM; Johnston, RA; Del Carpio, CA; Barreiro, LB; Reddy, TE; Tung, J. December 21, 2018

miR-34a is a microRNA safeguard for Citrobacter-induced inflammatory colon oncogenesis.

Wang, L; Wang, E; Wang, Y; Mines, R; Xiang, K; Sun, Z; Zhou, G; Chen, K-Y; Rakhilin, N; Chao, S; Ye, G; Wu, Z; Yan, H; Shen, H; Everitt, J; Bu, P; Shen, X. December 13, 2018

Ecological differentiation facilitates fine-scale coexistence of sexual and asexual Boechera.

Rushworth, CA; Windham, MD; Keith, RA; Mitchell-Olds, T. December 13, 2018

Effect modification of FADS2 polymorphisms on the association between breastfeeding and intelligence: results from a collaborative meta-analysis.

Hartwig, FP; Davies, NM; Horta, BL; Ahluwalia, TS; Bisgaard, H; Bønnelykke, K; Caspi, A; Moffitt, TE; Poulton, R; Sajjad, A; Tiemeier, HW; Dalmau-Bueno, A; Guxens, M; Bustamante, M; Santa-Marina, L; Parker, N; Paus, T; Pausova, Z; Lauritzen, L; Schnurr, TM; Michaelsen, KF; Hansen, T; Oddy, W; Pennell, CE; Warrington, NM; Davey Smith, G; Victora, CG. December 11, 2018

Dominance rank-associated gene expression is widespread, sex-specific, and a precursor to high social status in wild male baboons.

Lea, AJ; Akinyi, MY; Nyakundi, R; Mareri, P; Nyundo, F; Kariuki, T; Alberts, SC; Archie, EA; Tung, J. December 11, 2018

Exploration of NO2 and PM2.5 air pollution and mental health problems using high-resolution data in London-based children from a UK longitudinal cohort study.

Roberts, S; Arseneault, L; Barratt, B; Beevers, S; Danese, A; Odgers, CL; Moffitt, TE; Reuben, A; Kelly, FJ; Fisher, HL. December 10, 2018

Common-variant associations with fragile X syndrome.

Crowley, JJ; Szatkiewicz, J; Kähler, AK; Giusti-Rodriguez, P; Ancalade, N; Booker, JK; Carr, JL; Crawford, GE; Losh, M; Stockmeier, CA; Taylor, AK; Piven, J; Sullivan, PF. December 7, 2018

Applying ecological resistance and resilience to dissect bacterial antibiotic responses.

Meredith, HR; Andreani, V; Ma, HR; Lopatkin, AJ; Lee, AJ; Anderson, DJ; Batt, G; You, L. December 5, 2018

Evolution of DNA methylation in Papio baboons.

Vilgalys, T; Rogers, J; Jolly, C; Mukherjee, S; Tung, J. December 5, 2018

Comprehensive functional genomic resource and integrative model for the human brain.

Wang, D; Liu, S; Warrell, J; Won, H; Shi, X; Navarro, FCP; Clarke, D; Gu, M; Emani, P; Yang, YT; Xu, M; Gandal, MJ; Lou, S; Zhang, J; Park, JJ; Yan, C; Rhie, SK; Manakongtreecheep, K; Zhou, H; Nathan, A; Peters, M; Mattei, E; Fitzgerald, D; Brunetti, T; Moore, J; Jiang, Y; Girdhar, K; Hoffman, GE; Kalayci, S; Gümüş, ZH; Crawford, GE; PsychENCODE Consortium, ; Roussos, P; Akbarian, S; Jaffe, AE; White, KP; Weng, Z; Sestan, N; Geschwind, DH; Knowles, JA; Gerstein, MB. December 1, 2018

Transcriptome and epigenome landscape of human cortical development modeled in organoids.

Amiri, A; Coppola, G; Scuderi, S; Wu, F; Roychowdhury, T; Liu, F; Pochareddy, S; Shin, Y; Safi, A; Song, L; Zhu, Y; Sousa, AMM; PsychENCODE Consortium, ; Gerstein, M; Crawford, GE; Sestan, N; Abyzov, A; Vaccarino, FM. December 1, 2018

TET2 Deficiency Sets the Stage for B-cell Lymphoma.

Shingleton, JR; Dave, SS. December 1, 2018

Microbial nitrogen limitation in the mammalian large intestine.

Reese, AT; Pereira, FC; Schintlmeister, A; Berry, D; Wagner, M; Hale, LP; Wu, A; Jiang, S; Durand, HK; Zhou, X; Premont, RT; Diehl, AM; O'Connell, TM; Alberts, SC; Kartzinel, TR; Pringle, RM; Dunn, RR; Wright, JP; David, LA. December 1, 2018

An explant technique for high-resolution imaging and manipulation of mycobacterial granulomas.

Cronan, MR; Matty, MA; Rosenberg, AF; Blanc, L; Pyle, CJ; Espenschied, ST; Rawls, JF; Dartois, V; Tobin, DM. December 1, 2018

A computational reconstruction of Papio phylogeny using Alu insertion polymorphisms

Jordan, VE; Walker, JA; Beckstrom, TO; Steely, CJ; McDaniel, CL; St. Romain, CP; Worley, KC; Phillips-Conroy, J; Jolly, CJ; Rogers, J; Konkel, MK; Batzer, MA. December 1, 2018