Research Publications

Comprehensive functional genomic resource and integrative model for the human brain.

Wang, D; Liu, S; Warrell, J; Won, H; Shi, X; Navarro, FCP; Clarke, D; Gu, M; Emani, P; Yang, YT; Xu, M; Gandal, MJ; Lou, S; Zhang, J; Park, JJ; Yan, C; Rhie, SK; Manakongtreecheep, K; Zhou, H; Nathan, A; Peters, M; Mattei, E; Fitzgerald, D; Brunetti, T; Moore, J; Jiang, Y; Girdhar, K; Hoffman, GE; Kalayci, S; Gümüş, ZH; Crawford, GE; PsychENCODE Consortium, ; Roussos, P; Akbarian, S; Jaffe, AE; White, KP; Weng, Z; Sestan, N; Geschwind, DH; Knowles, JA; Gerstein, MB. December 1, 2018

Transcriptome and epigenome landscape of human cortical development modeled in organoids.

Amiri, A; Coppola, G; Scuderi, S; Wu, F; Roychowdhury, T; Liu, F; Pochareddy, S; Shin, Y; Safi, A; Song, L; Zhu, Y; Sousa, AMM; PsychENCODE Consortium, ; Gerstein, M; Crawford, GE; Sestan, N; Abyzov, A; Vaccarino, FM. December 1, 2018

TET2 Deficiency Sets the Stage for B-cell Lymphoma.

Shingleton, JR; Dave, SS. December 1, 2018

Pulling the genome in opposite directions to dissect gene networks

Gersbach, CA; Barrangou, R. December 1, 2018

Microbial nitrogen limitation in the mammalian large intestine.

Reese, AT; Pereira, FC; Schintlmeister, A; Berry, D; Wagner, M; Hale, LP; Wu, A; Jiang, S; Durand, HK; Zhou, X; Premont, RT; Diehl, AM; O'Connell, TM; Alberts, SC; Kartzinel, TR; Pringle, RM; Dunn, RR; Wright, JP; David, LA. December 1, 2018

An explant technique for high-resolution imaging and manipulation of mycobacterial granulomas.

Cronan, MR; Matty, MA; Rosenberg, AF; Blanc, L; Pyle, CJ; Espenschied, ST; Rawls, JF; Dartois, V; Tobin, DM. December 1, 2018

A computational reconstruction of Papio phylogeny using Alu insertion polymorphisms

Jordan, VE; Walker, JA; Beckstrom, TO; Steely, CJ; McDaniel, CL; St. Romain, CP; Worley, KC; Phillips-Conroy, J; Jolly, CJ; Rogers, J; Konkel, MK; Batzer, MA. December 1, 2018

Analysis of lineage-specific Alu subfamilies in the genome of the olive baboon, Papio anubis

Steely, CJ; Baker, JN; Walker, JA; Loupe, CD; Batzer, MA. December 1, 2018

Mitochondrial Genome Variation Affects Multiple Respiration and Non-respiration Phenotypes in Saccharomyces cerevisiae.

Vijayraghavan, S; Kozmin, SG; Strope, PK; Skelly, DA; Lin, Z; Kennell, J; Magwene, PM; Dietrich, FS; McCusker, JH. November 29, 2018

Correction to: Dynamic linear models guide design and analysis of microbiota studies within artificial human guts.

Silverman, JD; Durand, HK; Bloom, RJ; Mukherjee, S; David, LA. November 27, 2018

Author Correction: Division of labour between Myc and G1 cyclins in cell cycle commitment and pace control.

Dong, P; Maddali, MV; Srimani, JK; Thélot, F; Nevins, JR; Mathey-Prevot, B; You, L. November 13, 2018

Dynamic linear models guide design and analysis of microbiota studies within artificial human guts.

Silverman, JD; Durand, HK; Bloom, RJ; Mukherjee, S; David, LA. November 12, 2018

Loss of tubulin deglutamylase CCP1 causes infantile-onset neurodegeneration.

Shashi, V; Magiera, MM; Klein, D; Zaki, M; Schoch, K; Rudnik-Schöneborn, S; Norman, A; Lopes Abath Neto, O; Dusl, M; Yuan, X; Bartesaghi, L; De Marco, P; Alfares, AA; Marom, R; Arold, ST; Guzmán-Vega, FJ; Pena, LD; Smith, EC; Steinlin, M; Babiker, MO; Mohassel, P; Foley, AR; Donkervoort, S; Kaur, R; Ghosh, PS; Stanley, V; Musaev, D; Nava, C; Mignot, C; Keren, B; Scala, M; Tassano, E; Picco, P; Doneda, P; Fiorillo, C; Issa, MY; Alassiri, A; Alahmad, A; Gerard, A; Liu, P; Yang, Y; Ertl-Wagner, B; Kranz, PG; Wentzensen, IM; Stucka, R; Stong, N; Allen, AS; Goldstein, DB; Undiagnosed Diseases Network, ; Schoser, B; Rösler, KM; Alfadhel, M; Capra, V; Chrast, R; Strom, TM; Kamsteeg, E-J; Bönnemann, CG; Gleeson, JG; Martini, R; Janke, C; Senderek, J. November 12, 2018

Genetic variation determines VEGF-A plasma levels in cancer patients.

Innocenti, F; Jiang, C; Sibley, AB; Etheridge, AS; Hatch, AJ; Denning, S; Niedzwiecki, D; Shterev, ID; Lin, J; Furukawa, Y; Kubo, M; Kindler, HL; Auman, JT; Venook, AP; Hurwitz, HI; McLeod, HL; Ratain, MJ; Gordan, R; Nixon, AB; Owzar, K. November 5, 2018

Predicting gene structure changes resulting from genetic variants via exon definition features.

Majoros, WH; Holt, C; Campbell, MS; Ware, D; Yandell, M; Reddy, TE. November 1, 2018

Identification of DK419, a potent inhibitor of Wnt/β-catenin signaling and colorectal cancer growth.

Wang, J; Mook, RA; Ren, X-R; Zhang, Q; Jing, G; Lu, M; Spasojevic, I; Lyerly, HK; Hsu, D; Chen, W. November 1, 2018

Chromatin conformation and transcriptional activity are permissive regulators of DNA replication initiation in Drosophila.

Armstrong, RL; Penke, TJR; Strahl, BD; Matera, AG; McKay, DJ; MacAlpine, DM; Duronio, RJ. November 1, 2018

Downregulation of SNCA Expression by Targeted Editing of DNA Methylation: A Potential Strategy for Precision Therapy in PD.

Kantor, B; Tagliafierro, L; Gu, J; Zamora, ME; Ilich, E; Grenier, C; Huang, ZY; Murphy, S; Chiba-Falek, O. November 1, 2018

Pneumococcal Colonization and the Nasopharyngeal Microbiota of Children in Botswana.

Kelly, MS; Surette, MG; Smieja, M; Rossi, L; Luinstra, K; Steenhoff, AP; Goldfarb, DM; Pernica, JM; Arscott-Mills, T; Boiditswe, S; Mazhani, T; Rawls, JF; Cunningham, CK; Shah, SS; Feemster, KA; Seed, PC. November 1, 2018