2010 Publications

2010 Publications

Two genes on A/J chromosome 18 are associated with susceptibility to Staphylococcus aureus infection by combined microarray and QTL analyses.
Ahn SH, Deshmukh H, Johnson N, Cowell LG, Rude TH, Scott WK, Nelson CL, Zaas AK, Marchuk DA, Keum S, Lamlertthon S, Sharma-Kuinkel BK, Sempowski GD, Fowler VG Jr
PLoS Pathog. 2010 Sep 2

Gene expression signatures as a guide to treatment strategies for in-transit metastatic melanoma.
Augustine CK, Jung SH, Sohn I, Yoo JS, Yoshimoto Y, Olson JA Jr, Friedman HS, Ali-Osman F, Tyler DS.
Mol Cancer Ther. 2010 Apr

Both noncoding and protein-coding RNAs contribute to gene expression evolution in the primate brain.
Babbitt CC, Fedrigo O, Pfefferle AD, Boyle AP, Horvath JE, Furey TS, Wray GA.
Genome Biol Evol. 2010 Jan 18

Ovarian cancer tumor infiltrating T-regulatory (T(reg)) cells are associated with a metastatic phenotype.
Barnett JC, Bean SM, Whitaker RS, Kondoh E, Baba T, Fujii S, Marks JR, Dressman HK, Murphy SK, Berchuck A.
Gynecol Oncol. 2010 Mar

Intratumor heterogeneity and precision of microarray-based predictors of breast cancer biology and clinical outcome.
Barry WT, Kernagis DN, Dressman HK, Griffis RJ, Hunter JD, Olson JA, Marks JR, Ginsburg GS, Marcom PK, Nevins JR, Geradts J, Datto MB.
J Clin Oncol. 2010 May 1

A conserved PMK-1/p38 MAPK is required in caenorhabditis elegans tissue-specific immune response to Yersinia pestis infection.
Bolz DD, Tenor JL, Aballay A.
J Biol Chem. 2010 Apr 2

Lactic acidosis triggers starvation response with paradoxical induction of TXNIP through MondoA.
Chen JL, Merl D, Peterson CW, Wu J, Liu PY, Yin H, Muoio DM, Ayer DE, West M, Chi JT.
PLoS Genet. 2010 Sep 2

Pleiotrophin regulates the expansion and regeneration of hematopoietic stem cells.
Himburg HA, Muramoto GG, Daher P, Meadows SK, Russell JL, Doan P, Chi JT, Salter AB, Lento WE, Reya T, Chao NJ, Chute JP.
Nat Med. 2010 Apr

Immune signatures predict prognosis in localized cancer.
Hsu DS, Kim MK, Balakumaran BS, Acharya CR, Anders CK, Clay T, Lyerly HK, Drake CG, Morse MA, Febbo PG.
Cancer Invest. 2010 Aug

Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs.
Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Yan Au W, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI, Liu Q, How T, Grubor V, Gao Y, Patel A, Wu H, Zhu J, Blobe GC, Lipsky PE, Chadburn A, Dave SS
Blood. 2010 Dec 2

Myc-induced microRNAs integrate Myc-mediated cell proliferation and cell fate
Kim JW, Mori S, Nevins JR.
Cancer Res. 2010 Jun 15

Elevated MAL expression is accompanied by promoter hypomethylation and platinum resistance in epithelial ovarian cancer.
Lee PS, Teaberry VS, Bland AE, Huang Z, Whitaker RS, Baba T, Fujii S, Secord AA, Berchuck A, Murphy SK.
Int J Cancer. 2010 Mar 15

Intralysosomal iron induces lysosomal membrane permeabilization and cathepsin D-mediated cell death in trabecular meshwork cells exposed to oxidative stress.
Lin Y, Epstein DL, Liton PB.
Invest Ophthalmol Vis Sci. 2010 Dec

The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots.
Long TA, Tsukagoshi H, Busch W, Lahner B, Salt DE, Benfey PN
Plant Cell. 2010 Ju

Unmasking a role for sex chromosomes in gene silencing.
Maatouk DM, Capel B
Genome Biol. 2010

Gp93, the Drosophila GRP94 ortholog, is required for gut epithelial homeostasis and nutrient assimilation-coupled growth control
Maynard JC, Pham T, Zheng T, Jockheck-Clark A, Rankin HB, Newgard CB, Spana EP, Nicchitta CV.
Dev Biol. 2010 Mar 15

Diagnosis of partial body radiation exposure in mice using peripheral blood gene expression profiles.
Meadows SK, Dressman HK, Daher P, Himburg H, Russell JL, Doan P, Chao NJ, Lucas J, Nevins JR, Chute JP.
PLoS One.2010 Jul 12

Oscillating gene expression determines competence for periodic Arabidopsis root branching.
Moreno-Risueno MA, Van Norman JM, Moreno A, Zhang J, Ahnert SE, Benfey PN
Science. 2010 Sep 10

Systematic analysis of posttranscriptional gene expression
Morris AR, Mukherjee N, Keene JD.
Wiley Interdiscip Rev Syst Biol Med. 2010 Mar-Apr

LMP-420: a novel purine nucleoside analog with potent cytotoxic effects for CLL cells and minimal toxicity for normal hematopoietic cells.
Mowery YM, Weinberg JB, Kennedy MN, Bond KM, Moore JO, Lanasa MC, Gockerman JP, Diehl LF, Pizzo SV, Cianciolo GJ, Friedman DR
Leukemia. 2010 Sep

Tissue type-specific expression of the dsRNA-binding protein 76 and genome-wide elucidation of its target mRNAs.
Neplioueva V, Dobrikova EY, Mukherjee N, Keene JD, Gromeier M.
PLoS One. 2010 Jul 23

Isolation and characterization of microRNAs of human mature erythrocytes.
Sangokoya C, LaMonte G, Chi JT
Methods Mol Biol. 2010

microRNA miR-144 modulates oxidative stress tolerance and associates with anemia severity in sickle cell disease.
Sangokoya C, Telen MJ, Chi JT.
Blood. 2010 Nov 18

Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth.
Sozzani R, Cui H, Moreno-Risueno MA, Busch W, Van Norman JM, Vernoux T, Brady SM, Dewitte W, Murray JA, Benfey PN
Nature. 2010 Jul 1

Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root
Tsukagoshi H, Busch W, Benfey PN.
Cell. 2010 Nov 12

Arabidopsis BRCA2 and RAD51 proteins are specifically involved in defense gene transcription during plant immune responses.
Wang S, Durrant WE, Song J, Spivey NW, Dong X.
Proc Natl Acad Sci U S A. 2010 Dec 28

Blood gene expression signatures predict invasive candidiasis.
Zaas AK, Aziz H, Lucas J, Perfect JR, Ginsburg GS.
Sci Transl Med. 2010 Mar 3