2005 Publications

2005 Publications

Patterns of Gene ExpressionThat Characterize Long-term Survival in Advanced Stage Serous Ovarian Cancers
Berchuck A, Iversen ES, Lancaster JM, Pittman J, Luo J, Lancaster JM, Lee P, Muphy S, Dressman H, Febbo PG, West M, Nevins JR, and Marks JR.
Clin Cancer Res .11(10):3686-3696

Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines
Birnbaum K, Jung JW, Wang JY, Lambert GM, Hirst JA, Galbraith DW, Benfey PN
Nat Methods.2:615-9

Distinctions in the specificity of E2F function revealed by gene expression signatures
Black EP, Hallstrom T, Dressman HK, West M, Nevins JR
PNAS.102:15948-15953

Osmolarity regulates gene expression in intervertebral disc cells determined by gene array and real-time quantitative RT-PCR
Boyd LM, Richardson WJ, Chen J, Kraus VB, Tewari A, Setton LA.
Annals of Biomedical Engineering.33:1071-1077

Kaposi's sarcoma-associated herpesvirus expresses an array of viral microRNAs in latently infected cells.
Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR
PNAS.102(15):5570-5

DIG system for gene annotation and functional discovery
Delong M, Yao G, Wang Q, Dobra A, Black EP, Chang JT, Bild A, West M, Nevins JR, Dressman H
Bioinformatics.21: 2957-2959

Cryptococcus neoformans gene expression during murine macrophage infection.
Fan W, Kraus PR, Boily MJ, Heitman J
Eukaryot Cell.4(8):1420-33

Gene Expression Changes and Signaling Events Associated with the Direct Antimelanoma Effect of IFN-gamma
Gollob JA, Sciambi CJ, Huang Z, Dressman HK
Cancer Research .65:8869-8877

Molecular evidence for arterial repair in atherosclerosis
Karra, R, Vemullapalli S, Dong C, Herderick EE, Song X, Slosek, K, Nevins JR, West M, Goldschmidt-Clermont PJ, and Seo D
PNAS.102:16789-16794

Post-transcriptional operons and regulons co-ordinating gene expression.
Keene JD, Lager PJ
Chromosome Research.13:327-37

Specific Targeting of Gene Expression to a Subset of Human Trabecular Meshwork Cells Using the Chitinase 3-Like 1 Promoter
Liton PB, Liu X, Stamer WD, Challa P, Epstein DL, Gonzalez P
Invest Ophthalmol Vis Sci.46:183-190

Standardizing global gene expression analysis between laboratories and across platforms
Members of the Toxicogenomics Research Consortium
Nature Methods .2:1-6

Transcriptional Profile of the Arabidopsis Root Quiescent Center
Nawy T, Lee JY, Colinas J, Wang JY, Thongrod SC, Malamy JE, Birnbaum K, Benfey PN
Plant Cell.17:1908-1925

Nmyc plays an essential role during lung development as a dosagesensitive regulator of progenitor cell proliferation and differentiation.
Okubo, T, Knoepfler PS, Einman RN, Hogan BLM
Development.132:1363-1374

Loss of patched and disruption of granule cell development in a pre-neoplastic stage of medulloblastoma
Oliver TG, Read TA, Kessler JD, Mehmeti A, Wells JF, Huynh TT, Lin SM, Wechsler-Reya RJ
Development.132(10):2425-39

Differential cardiac gene expression during cardiopulmonary bypass: ischemia-independent upregulation of proinflammatory genes
Podgoreanu MV, Michelotti GA, Sato Y, Smith MP, Lin S, Morris RW, Grocott HP, Mathew JP, Schwinn DA
J Thorac Cardiovasc Surg.Aug;130(2):330-9

Differential cardiac gene expression during cardiopulmonary bypass: ischemia-independent upregulation of proinflammatory genes
Podgoreanu MV, Michelotti GA, Sato Y, Smith MP, Lin S, Morris RW, Grocott HP, Mathew JP, Schwinn DA.
J Thorac Cardiovasc Surg.130(2):330-9

Coordinated remodeling of cellular metabolism during iron deficiency through targeted mRNA degradation.
Puig S, Askeland, E., Thiele, DJ
Cell.14:120(1): 99-110

Transcriptional Network of Multiple Capsule and Melanin Genes Governed by the Cryptococcus neoformans Cyclic AMP Cascade
Pukkila-Worley R, Gerrald QD, Kraus PR, Boily MJ, Davis MJ, Giles SS, Cox GM, Heitman J, Alspaugh JA.
Eukaryotic Cell .4:190-201

Gene Expression Profiling and Genetic Markers in Glioblastoma Survival
Rich JN, Hans C, Jones B, Iversen ES, McLendon RE, Rasheed BK,
Dobra A, Dressman HK, Bigner DD, Nevins JR, West M
Cancer Research .65:4051-4058

Induction of Protein Secretory. Pathway Is Required for Systemic Acquired Resistance.
Wang D, Weaver ND, Kesarwani M, Dong X
Science.308:1036-1040

Analysis of Methylation Sensitive Transcriptome Identifies GADD45a as a Frequently Methylated Gene in Breast Cancer
Wang W, Huper G, Guo Y, Murphy SK, Olson J Jr., Marks JR.
Oncogene .24: 2705-2714