1999-2003 Publications

1999-2003 Publications


The TOR signaling cascade regulates gene expression in response to nutrients.
Cardenas ME, Cutler NS, Lorenz MC, Di Como CJ, and Heitman J.
Genes & Dev. 1999 13, 3271-3279.


a putative tumor suppressor, modulates cell growth and cell morphology of ras-transformed cells while repressing the transcription of stromelysin-1
Fenrick R, Wang L, Nip J, Amann JM, Rooney RJ, Walker-Daniels J, Crawford HC, Hulboy DL, Kinch MS, Matrisian LM, Hiebert SW.
(2000) TEL,Mol Cell Biol. Aug;20(16):5828-39.


Role for E2F in control of both DNA replication and mitotic functions as revealed from DNA microarray analysis.
Ishida S, Huang E, Zuzan H, Spang R, Leone G, West M, Nevins JR.
Mol Cell Biol. 2001 Jul;21(14):4684-99.

Predicting the clinical status of human breast cancer by using gene expression profiles.
West M, Blanchette C, Dressman H, Huang E, Ishida S, Spang R, Zuzan H, Olson JA Jr, Marks JR, Nevins JR.
Proc Natl Acad Sci 2001 Sep 25;98(20):11462-7.


Prediction and uncertainty in the analysis of gene expression profiles.
Spang, R., Zuzan, H., West, M., Nevins, J., Blanchette, Marks, J.R.
In Silico Biol. 2002 2: 0033.

A framework for integrating the songbird brain.
E.D. Jarvis, V.A. Smith, K. Wada, M.V. Rivas, M. McElroy,T.V. Smulders, P. Carninci, Y. Hayashizaki, F. Dietrich, X. Wu, P. McConnell, J. Yu, P.P. Wang, A.J. Hartemink, and S. Lin.
J Comp Physiol A 2002 188: 961-980.


Matrix metalloproteinase-1 gene promoter polymorphism and risk of ovarian cancer.
Wenham RM, Calingaert B, Ali S, McClean K, Whitaker R, Bentley R, Lancaster JM, Schildkraut J, Marks J, Berchuck A.
J Soc Gynecol Investig. 2003 10:381-7.

Tissue differential microarray analysis of dexamethasone induction reveals potential mechanisms of steroid glaucoma.
Lo WR, Rowlette LL, Caballero M, Yang P, Hernandez MR, Borras T.
Invest Ophthalmol Vis Sci. 2003 44(2):473-85.

Gene Expression Profiling for Prediction of Clinical Characteristics of Breast Cancer. Recent Prog.
Huang, E., West, M., and Nevins, J. R.
Horm. Res. 2003 58, 55-73.

Gene expression predictors of breast cancer outcomes.
Huang, E., Cheng, S. H., Dressman, H., Pittman, J., Tsou, M.-H., Horng, C.-F., Bild, A., Iversen, E. S., Liao, M., Chen, C.-M., West, M., Nevins, J. R., and Huang, A. T.
Lancet 2003 361, 1590-1596.

Distinct gene expression phenotypes of cells lacking Rb and Rb family members.
Black, E. P., Huang, E., Dressman, H., Ishida, S., West, M., and Nevins, J. R.
Cancer Res. 2003 63, 3716-3723.

Gene expression phenotypic models that predict the activity of oncogenic pathways.
Huang, E., Ishida, S., Pittman, J., Dressman, H., Bild, A., Kloos, M., D'Amico, M., Pestell, R. G., West, M., and Nevins, J. R.
Nat. Genet. 2003 34, 226-230.

Differential gene expression and genomic patient stratification following left ventricular assist device support.
Blaxall BC, Tschannen-Moran BM, Milano CA, Koch WJ.
J Am Coll Cardiol. 2003 41(7):1096-106.

Gene expression phenotypes of oncogenic signaling pathways.
Huang, E. S. Black, E.P., Dressman, H., West, M., and Nevins, J. R.
Cell Cycle 2003 2(5):415-7.

Towards integrated clinico-genomic models for personalized medicine: combining gene expression signatures and clinical factors in breast cancer outcomes prediction.
Nevins, J. R., Huang, E. S., Huang, A. T., Dressman, H., Pittman, J., and West, M.
Hum. Mol. Gen. 2003 12 Suppl 2:R153-7.

Neoadjuvant comparisons of aromatase inhibitors and tamoxifen: pretreatment determinants of response and on-treatment effect.
Ellis, MJ, Rosen E, Dressman H., and Marks J.
J Steroid Biochem Mol Biol. 2003 86:301-307.

Differential Myocardial Gene Expression in the Development and Rescue of Murine Heart Failure.
Blaxall BC, Spang R, Rockman HA, Koch WJ.
Physiol. Genomics 2003 15:105-114.

A Gene Expression Map of the Arabidopsis Root.
Kenneth Birnbaum, Dennis E. Shasha, Jean Y. Wang,Jee W. Jung,Georgina M. Lambert, David W. Galbraith, Philip N. Benfey.
Science 2003 302:1956-1960.