Uwe Ohler, PhD
Publications
Majoros WH, Ohler U.
Spatial preferences of microRNA targets in 3' untranslated regions.
BMC Genomics. 2007 Jun 7;8:152.
PMID: 17555584 [PubMed - in process]
Ohler U.
Identification of core promoter modules in Drosophila and their application in accurate transcription start site prediction.
Nucleic Acids Res. 2006;34(20):5943-50. Epub 2006 Oct 26.
PMID: 17068082 [PubMed - indexed for MEDLINE]
Ruvinsky I, Ohler U, Burge CB, Ruvkun G.
Detection of broadly expressed neuronal genes in C. elegans.
Dev Biol. 2007 Feb 15;302(2):617-26. Epub 2006 Sep 15.
PMID: 17046742 [PubMed - indexed for MEDLINE]
Bajic VB, Brent MR, Brown RH, Frankish A, Harrow J, Ohler U, Solovyev VV, Tan SL.
Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment.
Genome Biol. 2006;7 Suppl 1:S3.1-13. Epub 2006 Aug 7. Review.
PMID: 16925837 [PubMed - indexed for MEDLINE]
Narlikar L, Gordan R, Ohler U, Hartemink AJ.
Informative priors based on transcription factor structural class improve de novo motif discovery.
Bioinformatics. 2006 Jul 15;22(14):e384-92.
PMID: 16873497 [PubMed - indexed for MEDLINE]
Narlikar L, Gordan R, Ohler U, Hartemink AJ.
Informative priors based on transcription factor structural class improve de novo motif discovery.
Bioinformatics. 2006 Jul 15;22(14):e384-92.
PMID: 16873497 [PubMed - indexed for MEDLINE]
Mace DL, Lee JY, Twigg RW, Colinas J, Benfey PN, Ohler U.
Quantification of transcription factor expression from Arabidopsis images.
Bioinformatics. 2006 Jul 15;22(14):e323-31.
PMID: 16873489 [PubMed - indexed for MEDLINE]
Huang W, Umbach DM, Ohler U, Li L.
Optimized mixed Markov models for motif identification.
BMC Bioinformatics. 2006 Jun 2;7:279.
PMID: 16749929 [PubMed - indexed for MEDLINE]
Lee JY, Colinas J, Wang JY, Mace D, Ohler U, Benfey PN.
Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots.
Proc Natl Acad Sci U S A. 2006 Apr 11;103(15):6055-60. Epub 2006 Mar 31.
PMID: 16581911 [PubMed - indexed for MEDLINE]
Ohler U, Shomron N, Burge CB.
Recognition of unknown conserved alternatively spliced exons.
PLoS Comput Biol. 2005 Jul;1(2):113-22. Epub 2005 Jul 8.
PMID: 16110330 [PubMed]
Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB.
Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification.
RNA. 2004 Sep;10(9):1309-22.
PMID: 15317971 [PubMed - indexed for MEDLINE]
Lim CY, Santoso B, Boulay T, Dong E, Ohler U, Kadonaga JT.
The MTE, a new core promoter element for transcription by RNA polymerase II.
Genes Dev. 2004 Jul 1;18(13):1606-17.
PMID: 15231738 [PubMed - indexed for MEDLINE]
Ohler U, Liao GC, Niemann H, Rubin GM.
Computational analysis of core promoters in the Drosophila genome.
Genome Biol. 2002;3(12):RESEARCH0087. Epub 2002 Dec 20.
PMID: 12537576 [PubMed - indexed for MEDLINE]
Contact Information
Uwe Ohler
Phone: 919-668-5388
2353C CIEMAS
uwe.ohler@duke.edu